PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g53656.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 103aa MW: 10955.3 Da PI: 6.9559

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g53656.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.3	4.9e-09	16	63	6	50
NAM 6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kk 50 F+P+ e+v+++L + ++g++ +e+ i++vdiy++eP+dL ++ Bradi1g53656.1.p 16 SFNPSPVEVVTHFLPRLISGEPlpRGAEHLIHRVDIYNHEPKDLApAT 63 7*******************53333456************6333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-7	16	63	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MEEAEAELGE VFYLCSFNPS PVEVVTHFLP RLISGEPLPR GAEHLIHRVD IYNHEPKDLA 60 PATASSSRSP NARKGAAPGQ RASPAPAPGQ SRRQGTSTMN PV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g53656.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233490.1	5e-34	uncharacterized protein LOC104583318
TrEMBL	A0A2K2DR93	6e-68	A0A2K2DR93_BRADI; Uncharacterized protein
STRING	BRADI2G46980.1	2e-33	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Bradi1g53656.1.p