PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54070.1.p
Common NameBRADI_1g54070
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 682aa    MW: 74546.5 Da    PI: 6.5519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13490536455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Bradi1g54070.1.p 490 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-518225IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111486535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18489554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17490552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11490535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-14490540No hitNo description
SMARTSM003532.4E-16492541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00317610674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MASCSEVHKS LQAVAQGLRW TYALLWQLCP DQGYYNFSSS FFKKALVWAE GHYNGAIKTR  60
KTVQQAHGHG APAPADQAAR HRSRQLKELF ESLAREAAAC GGPGGIMMMT GCRAEAVQEA  120
SARRPTAALA PEDLTETEWF YLMCASYSFP PHVGLPGRAF AKGGHVWLCR ANEVDSKVFS  180
RAILAKSAGI QTLVCIPVVD GVLEIGTTEN VKEDISLVQY AMSIFMDQQD IQMIPTISEH  240
STSDKICHMY QQSFQTPRKI HAGQDNEMEH DDDDIGAECA SGSGTNTGRN YSRDAPLNIV  300
GNTDDQATPN AGSSELMQLE IPEKVRDGCS SNLDDEIKML MVCQNSNDQS DFQRQDEPYE  360
SWHFLYEELC SGYPQSSGEN QDIVLQPENA HYAETVMSIL QRNDTRRQAA STNTRSYVAA  420
SHQSSFSTWH PTMLQQGRTA TGAGGTTQQR MLGSLLFNNA AAAASGYGKP ADDIRGEGGP  480
RREAADLSAN HVLQERKRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRSRIQ  540
DLESSSTRQQ QQQVHGGGGG ELARSAKRKM ATRAAVEGCS ASSSSSSAPP SSSLAAAAEV  600
QVSIIESDAL LELRCPDRRG LLLRIMQAVQ DQLRLDVTAV RASSDDGVLL AELRAKVREV  660
HGRRSSISEV KRAIHLIISS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-15721948225Transcription factor MYC3
4ywc_A1e-15721948225Transcription factor MYC3
4ywc_B1e-15721948225Transcription factor MYC3
5t0f_A9e-1672189185Transcription factor MYC3
5t0q_A9e-1672189185Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494499ERKRRE
2495500RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312733.10.0basic helix-loop-helix protein A
TrEMBLA0A0Q3K7460.0A0A0Q3K746_BRADI; Uncharacterized protein
STRINGBRADI1G54070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-68bHLH family protein