PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54111.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 662aa    MW: 72323 Da    PI: 6.2981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54111.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13475521455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Bradi1g54111.4.p 475 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 521
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-508211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18474540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17475536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-14475525No hitNo description
PfamPF000103.3E-11475520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MASCSEVHKS LQAVAQGLRW TYALLWQLCP DQGALLWAEG HYNGAIKTRK TVQQAHGAPA  60
PAPAEAADQA ARHRSRQLKE LFESLAREAA AAGGMMTGCR VDAVQAESAA RRPTAALAPE  120
DLTETEWFYL MCASYSFPPH VGLPGRAFAK GGHVWLCRAN EVDSKVFSRA ILAKSAGIQT  180
VVCIPIVDGV LEIGTTENVK EDISLVQYAM SIIMDQQDIQ MIPTISEHST SDKICHMYQQ  240
SFQTQRKIHG GQENEMEHDD DDIGAECASG SGTNAGRNYS QDTPLNIVGN TDDQETPNAG  300
SSELMQLEIP EKVRDGCSSN LDDEIQMLMV CQNSNDQSDF QRQDEPCDSW HFLYEELCSG  360
YPQSSGENQD MVLQPENAHY TETVMSILQR NTRRQAAGTS TRSYVAASHQ SSFSTWHPTM  420
LQQGRTATGA GGTTPQRMLR SVLFNNAAAS GHGKPADDFP RGGGPRREAA DLSANHVLQE  480
RKRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RSRIQDLESS STRQQQQVVH  540
GCGGLTAAAD QARSAKRKLA TREGSSASSS SAPSSSSAEV QVSIIESDAL LELRCPDRRG  600
LLLRAMQALQ DQLRLEITAV RASSDDGVLL AELRAKVREV HGRRSSISEV KRAIHLIISS  660
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-151120752225Transcription factor MYC3
4ywc_A5e-151120752225Transcription factor MYC3
4ywc_B5e-151120752225Transcription factor MYC3
5t0f_A4e-1572069185Transcription factor MYC3
5t0q_A4e-1572069185Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479484ERKRRE
2480485RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54111.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230011.10.0basic helix-loop-helix protein A isoform X2
TrEMBLA0A2K2DRD10.0A0A2K2DRD1_BRADI; Uncharacterized protein
STRINGBRADI1G54070.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-64bHLH family protein