PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54180.2.p
Common NameBRADI_1g54180, LOC100831882
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 371aa    MW: 38704.8 Da    PI: 7.5739
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.66.4e-24253315163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+e+krerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN aL+ el++lkk ++ +++++
  Bradi1g54180.2.p 253 EREIKRERRKQSNRESARRSRLRKQQECEELSRKVAELTTENNALRTELDQLKKACEDMEAQN 315
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165967.6E-8120226No hitNo description
Gene3DG3DSA:1.20.5.1708.7E-18252314No hitNo description
SMARTSM003388.5E-22253317IPR004827Basic-leucine zipper domain
PfamPF001702.2E-21253315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.461255318IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-11256311No hitNo description
CDDcd147022.56E-21258308No hitNo description
PROSITE patternPS000360260275IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAVA TAVPPQTHAE WAASVQAFYA AAGHPYAAWP AQHLMAAAAS  60
GAPYGAPVPF PMYHPGAAMA YYAQASMAAG VPYPTAEAVA AAPAVAEGKG KGKGGGVSPE  120
KGSSAAPSGD DGSRSCDSGS DDSSDTRDYD TDHKDSSAAK KRKSGNTSAE GEPSQTAVVT  180
YAAESPYQLK ARSASKLPVS APGRAALPNA TPNLNIGIDL WSASQPVAVL PGQGEASPGL  240
ALARCDGVGQ LDEREIKRER RKQSNRESAR RSRLRKQQEC EELSRKVAEL TTENNALRTE  300
LDQLKKACED MEAQNTRLME PAAVTTTLGM SIEAPKVKQH EDEGKLHKKS NNNSNGKYVG  360
GSRKPEANSR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275RRSRLRK
2269276RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1ALZ0.0D64051.1 Triticum aestivum mRNA for HALF-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228232.10.0DNA-binding protein EMBP-1 isoform X2
SwissprotP250322e-60EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0Q3NS870.0A0A0Q3NS87_BRADI; Uncharacterized protein
STRINGBRADI1G54180.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.18e-27basic region/leucine zipper transcription factor 16