PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54690.1.p
Common NameBRADI_1g54690
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 217aa    MW: 23883.5 Da    PI: 7.35
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11122169455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+++Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  Bradi1g54690.1.p 122 SHSIAERARREKISERMKMLQDLVPGC----NKVIGKASVLDEIINYIQALQ 169
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.48E-11116173No hitNo description
SuperFamilySSF474591.57E-16116175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-9122169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPALPEHWR RPVHLGEASS VVTDRSNGGR RRARRDVAAH HGDDSSMLVS TSGTGAGQDL  60
ADPEEKRLKK MESDSADGNL RTNAQTDSGN ASKVVDRNPT PPEPPKQDYI HVRARRGQAT  120
DSHSIAERAR REKISERMKM LQDLVPGCNK VIGKASVLDE IINYIQALQR QVEVGAEPFH  180
TALGLTLDPQ TPREHAQGST SEWLHMQIGN TYERVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561318.31e-146transcription factor BHLH094
SwissprotQ69WS38e-88BH094_ORYSJ; Transcription factor BHLH094
TrEMBLI1H2V11e-158I1H2V1_BRADI; Uncharacterized protein
STRINGBRADI1G54690.11e-159(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-47BIG PETAL P