PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g54690.3.p

Common Name

BRADI_1g54690

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 182aa MW: 20300.8 Da PI: 7.77

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g54690.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	63	110	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq Bradi1g54690.3.p 63 SHSIAERARREKISERMKMLQDLVPGC----NKVIGKASVLDEIINYIQALQ 110 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.83E-10	57	114	No hit	No description
SuperFamily	SSF47459	1.83E-18	57	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-19	59	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.145	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-9	63	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-11	65	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MADPEEKRLK KMESDSADGN LRTNAQTDSG NASKVVDRNP TPPEPPKQDY IHVRARRGQA 60 TDSHSIAERA RREKISERMK MLQDLVPGCN KVIGKASVLD EIINYIQALQ RQVEFLSMKL 120 EAVNAHVNNR IASFQSKDVG AEPFHTALGL TLDPQTPREH AQGSTSEWLH MQIGNTYERV 180 T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g54690.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561318.3	1e-133	transcription factor BHLH094
Swissprot	Q69WS3	1e-103	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A0Q3JS04	1e-133	A0A0Q3JS04_BRADI; Uncharacterized protein
STRING	BRADI1G54690.1	1e-108	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	1e-62	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Bradi1g54690.3.p