PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54690.4.p
Common NameBRADI_1g54690
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 171aa    MW: 18974.2 Da    PI: 7.164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54690.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-115299455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +h+++Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  Bradi1g54690.4.p 52 SHSIAERARREKISERMKMLQDLVPGC----NKVIGKASVLDEIINYIQALQ 99
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1846115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-1046103No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1948117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1454898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-95299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MESDSADGNL RTNAQTDSGN ASKVVDRNPT PPEPPKQDYI HVRARRGQAT DSHSIAERAR  60
REKISERMKM LQDLVPGCNK VIGKASVLDE IINYIQALQR QVEFLSMKLE AVNAHVNNRI  120
ASFQSKDVGA EPFHTALGLT LDPQTPREHA QGSTSEWLHM QIGNTYERVT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54690.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561318.31e-125transcription factor BHLH094
SwissprotQ69WS32e-98BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0Q3JS041e-125A0A0Q3JS04_BRADI; Uncharacterized protein
STRINGBRADI1G54690.11e-100(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-63BIG PETAL P