PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g55710.2.p
Common NameBRADI_1g55710, LOC100836677
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 762aa    MW: 82053.4 Da    PI: 6.6838
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g55710.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.21e-15447485240
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       ++k+C+CkkskClk+YCeCfaag++Cse C+C +C Nk 
  Bradi1g55710.2.p 447 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCLGCLNKP 485
                       689**********************************96 PP
2TCR50.63.8e-16532570139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+
  Bradi1g55710.2.p 532 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNT 570
                       589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17446487IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.102447572IPR005172CRC domain
PfamPF036381.2E-11449484IPR005172CRC domain
SMARTSM011141.3E-15532573IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11534570IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MSPIEPLKSA YSTNSLQAYQ SLSITSISSI FTSPHHNTQK ESKLSKSSFA DFNESEVCTD  60
HSDKNKPPSS SNAVRLFACT SSITEETHTA TSSVNEGIVD PAKGPNDLPQ PGRFESGSPD  120
HNTTPCHGVR SDLKQDKRRK SEAVQTNKNT LENRKCLFSS NIQLPDGCQP EEGNGEVLGC  180
DWEDLVSATS GELLAFDDTS TVEDHGGVRL AVNNAESCGF LLSELNGGCD ISDRTHPIGT  240
SQVYYHEMVM EEDKTENAQF FSEGQKTMSG EEMQDNLNED NACIPLGCKV ETHQQRGTRK  300
RCLVFEAAGY SNRTVQKESV GDLTVSKLKG KSVAQNHTNP GKTPSPRVLR GIGLHLNALA  360
LTSKDKIVCQ DPLSTALVPS VKTEQDMHGN LLSAGENFVH SSGELLDLQM DNDDCLAGGF  420
LGNDHISSQS SSPQKKRRKS DNGDDESCKR CSCKKSKCLK LYCECFAAGV YCSEPCSCLG  480
CLNKPIHEEI VLSTRKQIEF RNPLAFAPKV IRLSDAGQET QEDPNNTPAS ARHKRGCNCK  540
KSSCLKKYCE CYQGGVGCSS NCRCESCKNT FGMRDGAVSV ENEEMKQGGE QTESCGKEKE  600
NDEQKANVHN GDHQLVELGV PITPPLAISS SLLQQPNFSN AKPPRPSKPR TGSSSRPSKA  660
AASVLSHKIP KVANSVFNEE VPDILTEPAS PGIVKTSSPN GKRVSPPHNS LSISPSRRGG  720
RKLILKSIPS FPSLLGDTSS GSAISNSNSA FTESSLALGP P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1644956912120Protein lin-54 homolog
5fd3_B6e-1644956912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKQDKRR
2434438KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g55710.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557490.10.0protein tesmin/TSO1-like CXC 2
TrEMBLI1H3640.0I1H364_BRADI; Uncharacterized protein
STRINGBRADI1G55710.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-77TESMIN/TSO1-like CXC 2