PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g57070.1.p

Common Name

BRADI_1g57070, LOC100837815

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

YABBY

Protein Properties

Length: 171aa MW: 18876.3 Da PI: 8.8878

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g57070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.9	6.4e-71	5	158	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++l ++q+++a+++ l+ +++v +n+ s++ ++++++t Bradi1g57070.1.p 5 VQFNSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLGPFHQARTAQEN--------LVPNRGVPANNCGSYEPSSRNQRTM 89 6789****************************************************98........899*******99999988876 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +n+++ +p irPPekrqrvPsaynrfikeeiqr+k+snP+ishreafsaaaknWah+P++hfgl Bradi1g57070.1.p 90 AMY-PMLNNQQQVSP-----IRPPEKRQRVPSAYNRFIKEEIQRLKSSNPEISHREAFSAAAKNWAHLPRLHFGL 158 655.66677777777.....9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-62	8	158	IPR006780	YABBY protein
SuperFamily	SSF47095	1.31E-8	95	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.0E-6	106	152	IPR009071	High mobility group box domain
CDD	cd01390	9.14E-6	112	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048833	Biological Process	specification of floral organ number
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSSPVQFNSE HVCYVNCNYC NTILVVNVPN NCSYNIVTVR CGHCTMVLSM DLGPFHQART 60 AQENLVPNRG VPANNCGSYE PSSRNQRTMA MYPMLNNQQQ VSPIRPPEKR QRVPSAYNRF 120 IKEEIQRLKS SNPEISHREA FSAAAKNWAH LPRLHFGLSV VDGGGGGGGN *

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269\|PubMed:15604733, ECO:0000269\|PubMed:17369428}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g57070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274013	1e-127	AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds.
GenBank	AK070045	1e-127	AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence.
GenBank	CT828681	1e-127	CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence.
GenBank	CT828682	1e-127	CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence.
GenBank	CT828683	1e-127	CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence.
GenBank	CT832577	1e-127	CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence.
GenBank	FJ750932	1e-127	FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003557576.1	1e-125	protein YABBY 1
Swissprot	Q7XIM7	1e-98	YAB1_ORYSJ; Protein YABBY 1
TrEMBL	I1H3M0	1e-123	I1H3M0_BRADI; Uncharacterized protein
STRING	BRADI1G57070.1	1e-124	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121
Representative plant	OGRP14085	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-54	YABBY family protein

Link Out ? help Back to Top
Phytozome	Bradi1g57070.1.p
Entrez Gene	100837815

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ohmori Y,Abiko M,Horibata A,Hirano HY A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype. Plant Cell Physiol., 2008. 49(8): p. 1176-84 [PMID:18593744] Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice. Plant J., 2011. 65(1): p. 77-86 [PMID:21175891] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Tanaka W, et al. The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet. Plant Cell, 2012. 24(1): p. 80-95 [PMID:22286138] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]