PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57422.1.p
Common NameLOC104582313
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 349aa    MW: 38338.7 Da    PI: 4.8849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57422.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131359349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ien+ +r+vtfskRr g++K A+ L   ++++va+++   + k++ +
  Bradi1g57422.1.p 13 IENDEQRSVTFSKRRLGLFKGASDLAAVTGVRVAIVLETDSRKMHSF 59
                      9*************************************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-8162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.792363IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-141074IPR002100Transcription factor, MADS-box
PfamPF003195.2E-171359IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPRKERRSGV VYIENDEQRS VTFSKRRLGL FKGASDLAAV TGVRVAIVLE TDSRKMHSFG  60
TPSADPIIHA FLSGVPPPEP LTDEAKKTRI SWLQREVSRL DRENNVEEKR KKQSAQCIKE  120
IQQENPVMVA NHLFSKDEDL NLEDLTKLFN ELLHVQQGTG GRLPPLDHGH EQMTGDSSVS  180
LNLVPPSSAP PWGSAETPPS LLHPLGSHLL PHQSLTPVPR MLQPTPLAST PPTPYQLHEL  240
PPSLELPLQN YTSPYNVNTM DPVQNNTGPN STFQVYSGGN DFVGDDPFGY DQWAYVLSDQ  300
PRERFLDTDS YLGYQSTDLG QVHMGNDGLI DGLAQSSSSG EDGDVGTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57422.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693480.0KF469348.1 Brachypodium distachyon MADS-box transcription factor 54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230074.10.0transcription factor RLM1
TrEMBLA0A2K2DS200.0A0A2K2DS20_BRADI; Uncharacterized protein
STRINGBRADI1G57420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-14AGAMOUS-like 62