PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g58100.3.p
Common NameLOC104581734
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20402 Da    PI: 6.1349
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g58100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.2e-131561349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      i+n++ r ++f kR   ++K A   SvL++++vav++  + gk++ +
  Bradi1g58100.3.p 15 IDNDRERDISFYKRHSSMFKGAADFSVLTGTRVAVVLETNGGKMHSF 61
                      9********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-8164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.091565IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-7727IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-14876IPR002100Transcription factor, MADS-box
PfamPF003197.6E-141561IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-72742IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-74263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSRPRRERRL GVRYIDNDRE RDISFYKRHS SMFKGAADFS VLTGTRVAVV LETNGGKMHS  60
FGTPSADPIV DAFLSENPPI GPLTDDVTSA SIAWLQNEVA RLDMENTPEE NKTKLSIEDT  120
KKIQRENPGM VANFIFSKQE DLSLEDLIQL FHEYSRVQEV IERHTSYGKV IGQSLSLRIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g58100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693490.0KF469349.1 Brachypodium distachyon MADS-box transcription factor 55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228419.11e-131agamous-like MADS-box protein AGL62
TrEMBLA0A2K2DS751e-130A0A2K2DS75_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G58100.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-11AGAMOUS-like 62
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]