PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g58230.1.p
Common NameBRADI_1g58230, LOC100831206
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 378aa    MW: 40103.8 Da    PI: 4.7678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g58230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567.3e-18190236455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Bradi1g58230.1.p 190 VHNQSERRRRDRINEKMKALQELVPHC-----NKSDKASILDEAIEYLKSLQ 236
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-17181240No hitNo description
Gene3DG3DSA:4.10.280.104.0E-21184244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-21184251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.425186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-15190236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDMDGGTRPA PSRNRKIRLP MEGGGELMEL LWQDGAVVAQ AQRRCSQSGA GASGVTGEGD  60
AAAWLAPDGG GGRDLYSQLW RSIADADGAG AFVAGSSSRT GEAAAGSSFC GSNAVAPPPP  120
PLLPSPEAEA EEEEEPGASS AAGGHALLLK RGRDELDDSR CEDADDCEAV DETRTSRRPA  180
GKRRARAAEV HNQSERRRRD RINEKMKALQ ELVPHCNKSD KASILDEAIE YLKSLQLQVQ  240
IMWMTTGMAP MMFPGAHQLM PQMAMGLNPA CMPTAQSLSQ LQRVAPFMNN PLPNQMPQVQ  300
PPATDFPNVS NQMPNDGVCE PTNPFLHPND TLAAATQGMF SYGSQRAQQN EIHELMASTA  360
IPASGVCPPS SADRTGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181198KRRARAAEVHNQSERRRR
2194199ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g58230.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228426.10.0transcription factor PIF4 isoform X2
SwissprotQ10CH54e-98PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A0Q3HE180.0A0A0Q3HE18_BRADI; Uncharacterized protein
STRINGBRADI1G58230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-28phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]