PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g60531.4.p
Common NameBRADI_1g60531, LOC100830076
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 207aa    MW: 24286.1 Da    PI: 8.3955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g60531.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-14112198599
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++++++ ++++l +p +f +eh    +++  + l d + ++++  +  r + ++  l kGW+eF+ +++L +gD +vF+l+++    ++v +f
  Bradi1g60531.4.p 112 FVRPMTQTLSNLHIPSQFSTEHLP--QQDARVYLVDDDEEEYRTFY--RPHTSS--LNKGWREFAVDHELVDGDCLVFQLIKKAF--FKVYIF 196
                       56677888999***********53..36678***************..888877..************************99555..599999 PP

                       -S CS
                B3  98 rk 99 
                       r+
  Bradi1g60531.4.p 197 RA 198
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-19104199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-19105199IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.674108199IPR003340B3 DNA binding domain
CDDcd100173.45E-20110197No hitNo description
PfamPF023623.3E-12112198IPR003340B3 DNA binding domain
SMARTSM010194.4E-15112199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKQKRKAPAQ RDAGKDAPRR  60
RSNRIASIPE RPNYRENAIY SQKQKELKPD HAYAVSKAEE LKDELSSDYP TFVRPMTQTL  120
SNLHIPSQFS TEHLPQQDAR VYLVDDDEEE YRTFYRPHTS SLNKGWREFA VDHELVDGDC  180
LVFQLIKKAF FKVYIFRASS YYEDDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g60531.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228540.21e-150B3 domain-containing protein Os06g0194400
RefseqXP_014752375.21e-150B3 domain-containing protein Os06g0194400
SwissprotQ69V363e-74Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0Q3KAF81e-150A0A0Q3KAF8_BRADI; Uncharacterized protein
STRINGBRADI1G60530.11e-134(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]