PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g61110.1.p

Common Name

BRADI_1g61110, LOC100832803

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 264aa MW: 28558.8 Da PI: 5.6409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g61110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	39	87	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f L +l + + + Ka iL+ +++ +++L Bradi1g61110.1.p 39 KIHKAEREKHKRDKLNDLFGDLGNMLEAD----RQNNGKACILTDTTRILRDL 87 667889********************997....57788888888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.9E-9	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-10	37	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.137	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MVAMGSGNVS AATVSDGSAE KIVRGPVSDN KCKKKAPRKI HKAEREKHKR DKLNDLFGDL 60 GNMLEADRQN NGKACILTDT TRILRDLLSQ LESLRKENST LLNESHYVTM ERDELQDENS 120 VLRNEILELQ NELAMQVASN QGWGHGATTG SPLPVSHATS TVFPAQQPPS ITGAVFPLQQ 180 LTAIAQSYAA PPRELKLFPD AASVEGLEQS EHQEALNHVA RPQARYPTES ASWPVSLGLP 240 RMEDEQCSSS TTGSSKEASS GSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g61110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003557817.1	0.0	transcription factor BHLH062
Swissprot	Q69V10	9e-88	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	I1H506	0.0	I1H506_BRADI; Uncharacterized protein
STRING	BRADI1G61110.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84
Representative plant	OGRP6793	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	7e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi1g61110.1.p
Entrez Gene	100832803

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]