PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g61525.1.p
Common NameBRADI_1g61525
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 206aa    MW: 23946.3 Da    PI: 9.2626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g61525.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.38e-29181671127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatg 87 
                       lppG++F Pt++elvv+yL++k++g +  l  +++  +++++ P+++         k++e+ wyfF+kr +ky+tg+++nr+t  +g+W+atg
  Bradi1g61525.1.p  18 LPPGYHFAPTENELVVHYLRRKIAGLQPLLPIFFDVDNLNSYRPEQIVGtladkYRKHGEDCWYFFTKRVRKYSTGNHPNRTTPgKGFWNATG 110
                       79*************************76645566669*********7335663333466699******************77659******* PP

               NAM  88 kdkevlskkgelvglkktLvfy..................kgrapkgektdWvmheyr 127
                         + +++ ++el g  +tLvfy                  +   +k  kt+W+m ey+
  Bradi1g61525.1.p 111 PWRLIHV-DKELAGRVRTLVFYtepekeeqvapglkemddQTALSKLAKTSWIMYEYE 167
                       ******9.999***********88877776666665544334556667*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3613193IPR003441NAC domain
PROSITE profilePS5100535.22418194IPR003441NAC domain
PfamPF023653.5E-1919167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEVAPASTEH QRRFMLKLPP GYHFAPTENE LVVHYLRRKI AGLQPLLPIF FDVDNLNSYR  60
PEQIVGTLAD KYRKHGEDCW YFFTKRVRKY STGNHPNRTT PGKGFWNATG PWRLIHVDKE  120
LAGRVRTLVF YTEPEKEEQV APGLKEMDDQ TALSKLAKTS WIMYEYENLT SQAEAEDKNI  180
DKIDEWVLCT IQKRRRCNGK EKGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-241620015171NO APICAL MERISTEM PROTEIN
1ut4_B2e-241620015171NO APICAL MERISTEM PROTEIN
1ut7_A2e-241620015171NO APICAL MERISTEM PROTEIN
1ut7_B2e-241620015171NO APICAL MERISTEM PROTEIN
3swm_A2e-241620018174NAC domain-containing protein 19
3swm_B2e-241620018174NAC domain-containing protein 19
3swm_C2e-241620018174NAC domain-containing protein 19
3swm_D2e-241620018174NAC domain-containing protein 19
3swp_A2e-241620018174NAC domain-containing protein 19
3swp_B2e-241620018174NAC domain-containing protein 19
3swp_C2e-241620018174NAC domain-containing protein 19
3swp_D2e-241620018174NAC domain-containing protein 19
4dul_A2e-241620015171NAC domain-containing protein 19
4dul_B2e-241620015171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g61525.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230150.11e-135NAC domain containing protein 50
TrEMBLA0A0Q3HGB11e-153A0A0Q3HGB1_BRADI; Uncharacterized protein
STRINGEMT337736e-61(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.19e-29NAC family protein