PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g63220.1.p
Common NameBRADI_1g63220, LOC100839062
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 313aa    MW: 32546.8 Da    PI: 4.9097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g63220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32.1e-25115175259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+ ++ dp+   +tY geH+++
  Bradi1g63220.1.p 115 VDGHVWRKYGQKEIQNSPHPRSYYRCTHKsdqGCNAKRQVQACEADPSKYAVTYYGEHTCS 175
                       59**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26108175IPR003657WRKY domain
PROSITE profilePS5081122.55109172IPR003657WRKY domain
SuperFamilySSF1182904.32E-24112175IPR003657WRKY domain
SMARTSM007743.5E-35114176IPR003657WRKY domain
PfamPF031067.6E-25116174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MCMASSGGAG RDVPAEKAAA AVNDLIEVRE GAARLKILLQ EQSSEWTELI DDMLGKLSSA  60
LSALDTGGAA AGASSADGVI RPTAAGESSG GRTRRRISYR RSQRSSGKRV TDTLVDGHVW  120
RKYGQKEIQN SPHPRSYYRC THKSDQGCNA KRQVQACEAD PSKYAVTYYG EHTCSDYPSS  180
TAPMIIVAAA ADEDDDNLAN NLVSFAQTLS PHQLAKEEGV VAASRMSSSW CTTSADDVFS  240
SSADPFVQLA ADELAAVVVG SAGRTSDAGL HGGGGGTAAG TDSFATSSPS SLGFRVGSLG  300
TIGDDDFFLF DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-28110174468OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g63220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228655.10.0probable WRKY transcription factor 70
TrEMBLA0A0Q3JWU90.0A0A0Q3JWU9_BRADI; Uncharacterized protein
STRINGBRADI1G63220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-22WRKY DNA-binding protein 46