PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g63840.1.p
Common NameBRADI_1g63840, LOC100841768
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 229aa    MW: 24979.1 Da    PI: 10.293
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g63840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.14.4e-14158200547
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                       +r +r++kNRe+A rsR+RK+a++ eLe+k+  Le+eN+ L++
  Bradi1g63840.1.p 158 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENELLRS 200
                       6899**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-11154226IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082156200IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-11158200No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-14158200No hitNo description
PfamPF001705.9E-12158200IPR004827Basic-leucine zipper domain
CDDcd147071.13E-19158199No hitNo description
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGTQAMSSGG AISRQGSVCS LTLSEVEGQL HGVNLDDLLR TAGSARKTAD EVWRDIQSGG  60
GRALPPAPGQ MTLEDFLSKS VSDARWAEQY NPPPPAPAKG GQQQQRHSVG RPLPRPLGVG  120
AEPVLDALLY HDGPPPLNGR KRAAEAGLGG PGEKTVERRK KRMIKNRESA ARSRARKQAY  180
TNELENKISR LEEENELLRS YKAFEPVVHY VPQEEPKNQL RRRNSASF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139160RKRAAEAGLGGPGEKTVERRKK
2139161RKRAAEAGLGGPGEKTVERRKKR
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g63840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614232e-92AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558020.11e-166ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9C5Q21e-37AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A0Q3LFY51e-165A0A0Q3LFY5_BRADI; Uncharacterized protein
STRINGBRADI1G63840.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Representative plantOGRP1592233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.14e-32ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]