PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g64800.1.p
Common NameBRADI_1g64800, LOC100830693
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 298aa    MW: 32250.2 Da    PI: 6.8301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g64800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-12227250226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ + r G C++G+rC+FaHg
  Bradi1g64800.1.p 227 KTELCNKWER-GACPFGGRCRFAHG 250
                       8*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.1E-14221257IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7225251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084225252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8225256IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10227250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-10258289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7259288IPR000571Zinc finger, CCCH-type
SMARTSM003560.01262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.399262290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGELGYLSP AMSPCVSAEG FGSPISASPQ EKLIDSSPSS CVSDDHGGGG QLRSLTWGSS  60
LEMQLDSPSS CVSDGRGGSH DSPLGASSAQ VREAERLLRA ISDRYDDCFI RLRDSTAELA  120
DLRLERLRLR AENVHLSLLL EDLEADQRRQ AFPVAATLPL KPAEEAAARG GAPKSISIRS  180
KSYLAEKHTK AQRLRVRAAP AMEEAGEDEE KGDGEVEVDA YRQGSHKTEL CNKWERGACP  240
FGGRCRFAHG LQEMRPVIRH PRYKTQPCQM MAAASGCPYG HRCHFRHSPA PAAAGCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A9e-172262901075Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g64800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186684e-82AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372674e-82AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149594e-82AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-82CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561710.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-101C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLI1H6B80.0I1H6B8_BRADI; Uncharacterized protein
STRINGBRADI1G64800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-33C3H family protein