PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g65760.1.p
Common NameBRADI_1g65760, LOC100843229
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 214aa    MW: 23079.3 Da    PI: 5.6555
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g65760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.9e-40511501100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+lapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq++ + lk+ 
  Bradi1g65760.1.p  51 PCAACKLLRRRCADGCMLAPYFPPTDPAKFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQEEANDLKVR 143
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++ 
  Bradi1g65760.1.p 144 LARAQAD 150
                       *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08650151IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3951148IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEYSNEATNT AAPRRPSMSP PSSRPVSSSC SPPPPAVFPL ASSSPTVVLS PCAACKLLRR  60
RCADGCMLAP YFPPTDPAKF TTAHRVFGAS NIIKLLQELP ESARADAVSS MVYEAEARLR  120
DPVYGCAGAV CRLQEEANDL KVRLARAQAD LLSVQAQHAN LLALVCVELA RYQQPHPSPP  180
PLVDDGLDHG AMYQSLYDSD LDLAAWEETR LWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-395015210112LOB family transfactor Ramosa2.1
5ly0_B1e-395015210112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g65760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725151e-134AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBankCT8321431e-134CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561741.11e-154LOB domain-containing protein 1
SwissprotQ9LQR01e-60LBD1_ARATH; LOB domain-containing protein 1
TrEMBLI1H6N21e-152I1H6N2_BRADI; Uncharacterized protein
STRINGBRADI1G65760.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-62LOB domain-containing protein 1