PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67340.1.p
Common NameBRADI_1g67340, LOC100824529
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 581aa    MW: 61251.8 Da    PI: 5.1258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.37.6e-911295301373
              GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvs..elykalppsetsekn.........sse 76 
                       l +lL+++Aea+s   ++ ela+ +L rl++++s++ d    +m+Rlaa+ft AL+  l +s +  +  k+ ++ +++ ++          s+
  Bradi1g67340.1.p 129 LLHLLMAAAEALSGphKSRELARVILVRLKDMVSSTSDaaasNMERLAAHFTDALQGLLDGSHPlsGAGKQAAAMAAAASSsslhhhhynASD 221
                       579**********8557777************77776655669*************9998854311333333222222222234556677888 PP

              GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167
                       +l+a+++++++sP++kf+h+taNqaIleav+g++rvH++D+d+ +G+QW++L+qa++sRp   +pp+lRiT+v +   g +++++e g+rLa 
  Bradi1g67340.1.p 222 VLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDLAEGIQWASLMQAMTSRPdgVSPPHLRITAVTRGGGGGARAVQEAGRRLAA 314
                       8888899*****************************************************6666***********7777************** PP

              GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse........ 251
                       fA ++g pf+f     ++ e +++ + r+ +gE+l+ n++l+       +v  +     ++L  +  l +kvv+vve+e + +se        
  Bradi1g67340.1.p 315 FAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMAALGAKVVTVVEEEGEASSEkesdekee 406
                       ************99999**********************99665554.333333347899*******************9997777999**** PP

              GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                            F++rf+e l+ ysa+ dslea++p++s+ r  vEr++lg++i  +v+ + +         + W e+++ +GFk+vpls ++ +qa+ll
  Bradi1g67340.1.p 407 gaagGFVARFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILGPNIAGAVSRAYRG--GMDGGRGGWGEWMRGSGFKAVPLSCFNHSQARLL 497
                       ****************************************************99988..7778889*************************** PP

              GRAS 341 lrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                       l  ++ dgy+vee   + +vlgWk r+L+s+S+W
  Bradi1g67340.1.p 498 LGLFN-DGYTVEETrPNKIVLGWKARRLLSASVW 530
                       *****.******87367788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.229103511IPR005202Transcription factor GRAS
PfamPF035142.6E-88129530IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDVTMEDVVG DLEISGCSSS TATSSPSSSS LVDDDMGLYA WNALSPVADW GPFCSDDGGQ  60
DLHGLIESML SDDALVGADP ASSLFHQAGP CYSNGSDPSS TTTTNPGTPV YDDPAQAQAE  120
CSPEKGLRLL HLLMAAAEAL SGPHKSRELA RVILVRLKDM VSSTSDAAAS NMERLAAHFT  180
DALQGLLDGS HPLSGAGKQA AAMAAAASSS SLHHHHYNAS DVLTAFQMLQ DMSPYMKFGH  240
FTANQAILEA VAGDRRVHVV DYDLAEGIQW ASLMQAMTSR PDGVSPPHLR ITAVTRGGGG  300
GARAVQEAGR RLAAFAGSIG QPFSFGHCRL DSDERFRPAT VRMVKGETLV ANCILHQAAA  360
TTTVRRPTGS VASFLTGMAA LGAKVVTVVE EEGEASSEKE SDEKEEGAAG GFVARFMEEL  420
HRYSAVWDSL EAGFPTQSRV RGLVERVILG PNIAGAVSRA YRGGMDGGRG GWGEWMRGSG  480
FKAVPLSCFN HSQARLLLGL FNDGYTVEET RPNKIVLGWK ARRLLSASVW APPPLSVPSS  540
PAEAVFQPIG MAMAPAASGF GRMEFDFIDS FLVEPAYALV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4916153245380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67340.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558300.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-158NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0Q3SBV30.0A0A0Q3SBV3_BRADI; Uncharacterized protein
STRINGBRADI1G67340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-80GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]