PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67350.1.p
Common NameBRADI_1g67350, LOC100836306
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 247aa    MW: 25459.9 Da    PI: 5.0704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-184392255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  Bradi1g67350.1.p 43 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 92
                      69****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-2942102IPR001471AP2/ERF domain
CDDcd000181.48E-1843100No hitNo description
PROSITE profilePS5103221.77343100IPR001471AP2/ERF domain
PfamPF008474.4E-114392IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2043101IPR016177DNA-binding domain
SMARTSM003801.3E-3443106IPR001471AP2/ERF domain
PRINTSPR003675.6E-84455IPR001471AP2/ERF domain
PRINTSPR003675.6E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKNYPSSSR CDGAAAAGSG AAAAALCVSG SRLQPAAAVS SRQYKGVRMR SWGSWVSEIR  60
APHQKRRIWL GSYATPEAAA RAYDAALLCL KGSHAVLNFP SSSSSSSEYS VADDLSTRSI  120
QRAAAAAAAA FEATRVVVED SCSSSGAEAT TVTTATSAAS STLGSAANVR HATTPSSSSS  180
AAASENGSPD QGDEEDRLWT ELVDGFVSSP KLMDLVAAGH GTPFSSSSWD QEPEEDGEMM  240
RLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13431071479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67350.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3567332e-93AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228833.11e-176ethylene-responsive transcription factor ERF014
TrEMBLI1H7751e-174I1H775_BRADI; Uncharacterized protein
STRINGBRADI1G67350.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Representative plantOGRP1277745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-22ERF family protein