PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g67500.1.p

Common Name

BRADI_1g67500, LOC100827310

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 420aa MW: 44566.8 Da PI: 5.539

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g67500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	211	257	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Bradi1g67500.1.p 211 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 257 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-11	211	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.26E-5	211	260	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-14	212	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-15	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	6.6E-4	300	351	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGAHGDRRRH RREEVGVILD EEEEDLEQHE GACGGGATSG VLAAEEELGG GGCEEAGGAG 60 MVFEASSSVG SASVTMGPPP IMCWPPPVPS SLSSQALHHY HNINNLGSGG GGQQGPFFPL 120 LPPQPPPPPP FFADLYARRA LQFAYDHHHH HSGGASSSSS DPLGLYMGMA GYGQYGGSPG 180 AAGMMMPPPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK 240 TDKASLLAEV IQHVKELKRQ TSEIREEAAS ACPCPLPTES DELTVDASSD EDGRLLVRAS 300 LCCDDRADLL PDLIRALKAL RLRALKAEIT TLGGRVKNVL LVTEDHSCDH QQQQQQDDGD 360 EPMPMSPQHA VASIQEALRA VMERTASSAP AEDSGGSGSG GLKRQRTTSL SAILENRSI*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGAHGDRRRH RREEVGVILD EEEEDLEQHE GACGGGATSG VLAAEEELGG GGCEEAGGAG  60
MVFEASSSVG SASVTMGPPP IMCWPPPVPS SLSSQALHHY HNINNLGSGG GGQQGPFFPL  120
LPPQPPPPPP FFADLYARRA LQFAYDHHHH HSGGASSSSS DPLGLYMGMA GYGQYGGSPG  180
AAGMMMPPPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK  240
TDKASLLAEV IQHVKELKRQ TSEIREEAAS ACPCPLPTES DELTVDASSD EDGRLLVRAS  300
LCCDDRADLL PDLIRALKAL RLRALKAEIT TLGGRVKNVL LVTEDHSCDH QQQQQQDDGD  360
EPMPMSPQHA VASIQEALRA VMERTASSAP AEDSGGSGSG GLKRQRTTSL SAILENRSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g67500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558309.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-71	BH030_ARATH; Transcription factor bHLH30
TrEMBL	I1H791	0.0	I1H791_BRADI; Uncharacterized protein
STRING	BRADI1G67500.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi1g67500.1.p
Entrez Gene	100827310

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]