PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68510.1.p
Common NameBRADI_1g68510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 664aa    MW: 73288 Da    PI: 6.9373
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-084385347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
  Bradi1g68510.1.p 43 AWTHQEEESFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 85
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-93589IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-53888IPR009057Homeodomain-like
PROSITE profilePS5129312.6863990IPR017884SANT domain
SMARTSM007171.7E-54088IPR001005SANT/Myb domain
CDDcd001672.09E-54386No hitNo description
PfamPF002493.6E-64385IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEKEASEEMS PPPQPVDFPL ATLLRASDPD QKPAKKPTRQ WAAWTHQEEE SFFNALRQVG  60
KNFEKITLRV QSKNKDQVRH YYYRLVRRMK KILGPEFSLD ARNSKDTIAA MLRWWSLLEK  120
FSCSASKLHL RPRRMKTFVE TLGNQLLKDR KRTRRKCPQG DMYLASSPIL SKTPGNQSSS  180
VELLPMDAQD GSIVAYSKGA FSKRVVETNS NRSGAIKGDL SATRTVKQKR RAGGVGATAA  240
YKKWERAAMA GVSLVADAAE EIERSIVTQN LCNVDARPLA SSSNNVATVE AIGTNQIKEA  300
DPQAPSKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KMSSVLEHLN RKWGNSNIAC  360
GELVLFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS LAELEAGVSE  420
ISLTHFENCM IPEDVQVKSS SEACAQKDST SLGGFTSEHP SCNSNDQSSL LLGTPSSTDK  480
NAEEEQSTNV SPSQSGSQHQ EQVPDQATEV YQGMKCVAMS EVEWADTLTD ISVGYLLTEA  540
SKGAKLDCPG TSSVKNALLD NSCSYDSFDA AVALHTSRYQ VAEQSAHTSH SNIWGAEETC  600
DEFSFKSAAG RKQEGSNTLA GSPPDSDNEV HSPNSEGFRG FLEVGCRSIL DSQQVFTHWH  660
VNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g68510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228893.10.0TSL-kinase interacting protein 1
TrEMBLA0A0Q3KDX20.0A0A0Q3KDX2_BRADI; Uncharacterized protein
STRINGBRADI1G68510.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-149TSL-kinase interacting protein 1