PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68570.1.p
Common NameBRADI_1g68570, LOC100827312
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 254aa    MW: 26204.9 Da    PI: 7.0082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002579101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C + F ++  L  H++ H
  Bradi1g68570.1.p  79 FTCNYCQRKFFSSQALGGHQNAH 101
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-676106No hitNo description
PROSITE profilePS5015711.32379106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKSSNSFLRQ QEPCDDQLSL SDISSQAASN SSSAGPPLAL DLSLAAAAAT ESSTTDSNGS  60
GGSKAAAATA GAREPTRVFT CNYCQRKFFS SQALGGHQNA HRRERTLARR AVHHRLDAFP  120
YGYADVASLP LYGSPGLYHP IGIQAHASAH RQGLLASAER QQHQQEVVVA AAAEARPGRA  180
LLGPMPFLVG GGEEEASCFG TWPGSFRAPA GGVLFTPDAR AFHSGSSNLG GGGSSSGSAL  240
VQADEEPDLT LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g68570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751191e-72AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558394.10.0zinc finger protein 4 isoform X2
TrEMBLI1H7L50.0I1H7L5_BRADI; Uncharacterized protein
STRINGBRADI1G68570.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-26zinc-finger protein 1