PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69110.5.p
Common NameBRADI_1g69110, LOC100833764
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 307aa    MW: 32768.6 Da    PI: 5.4283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69110.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11124171355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ + f  L +++P +     kK +K++ L  ++eY+k+L+
  Bradi1g69110.5.p 124 QEHVMAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIEYVKQLE 171
                       5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-14125184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-10126175No hitNo description
SMARTSM003532.9E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.063237306IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYQQDGHVPG MEQQFAEPPP LPDQHREQYY TSPMATPSSF HPPRSSNFQS FGGSSSLPNL  60
SFGAMPAVKD EQGQPPSNFL SFGGQAMATT LNFSGGSGSW QQDGMEAVQL QAPERRSRAP  120
GNAQEHVMAE RKRREKLQQQ FVSLATIVPG LKKTDKISLL GSTIEYVKQL EEKVKALEEQ  180
GTRRSADSTT VFESKCCISA GADNDAAAGT SGGGGGGDGG EYSSPAVEAG IRGNTALLKI  240
CCKERRGVLV MVLSELENQG LSIINTNVVP FTDSCLNITI TAKIEEGFSS AVDLVKNLTT  300
ALRNFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134ERKRRE
2130135RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69110.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230206.10.0transcription factor bHLH18 isoform X2
RefseqXP_024313075.10.0transcription factor NAI1 isoform X1
TrEMBLA0A0Q3KE630.0A0A0Q3KE63_BRADI; Uncharacterized protein
STRINGBRADI1G69110.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-35bHLH family protein