PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69407.1.p
Common NameBRADI_1g69407
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 394aa    MW: 43389.3 Da    PI: 4.5808
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34521442103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw++ g+sfv++d++ f++++L ++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F +g+k+ll
  Bradi1g69407.1.p  52 FLTKVYDMVSDPATDKVISWTQAGSSFVISDSHAFERDLLRRHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEWANEGFLRGQKHLL 135
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikrkk++
  Bradi1g69407.1.p 136 KTIKRKKRS 144
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3644136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-5548141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3348141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-175275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1790102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-17103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGSKKASPPP SGAASASRAA GLNEASSDVG ASTGNGTAPV GAVPKPPDVP PFLTKVYDMV  60
SDPATDKVIS WTQAGSSFVI SDSHAFERDL LRRHFKHSNF SSFIRQLNTY GFRKVDPDRW  120
EWANEGFLRG QKHLLKTIKR KKRSPQEAGS ELEQAPVKTP PGTENIEIGK YGGLVKEVET  180
LKRDKALLMQ QLVDLRHYQQ SSNLEVQNLV QRLQVMEQNQ QQMMALLAIV VQNPSFLNQL  240
VQQQQRRSNW WNADGNKKRR FPALEQGPVT EQETSGGGTE IIQYLPPVPE TSGQGIPDEA  300
FCSATAQTTS SPPLDMPMDI DTKTTSDNLD NVGSFGDFLT DTPADWDIEL FFDDDGEPLI  360
APLENNGQVD PPLSVQDYDF PQSEQDCQME AQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26301416129Heat shock factor protein 1
5d5v_B5e-26301416129Heat shock factor protein 1
5d5v_D5e-26301416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69407.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753057.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-9-like
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLI1H7W30.0I1H7W3_BRADI; Uncharacterized protein
STRINGBRADI1G69407.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Representative plantOGRP1278345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.24e-77heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]