PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g70067.1.p
Common NameBRADI_1g70067, LOC100821375
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 294aa    MW: 32877.4 Da    PI: 5.1614
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g70067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15261021797
                       E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++p +fa++ +g +  +++l+l+    gr W v + +++ + +++lt+GW +F++a+gL  g f+vF++dg s+  l v+vf
  Bradi1g70067.1.p  26 RMPDEFAAALDGRE--PQELKLREaGGGRLWAVDVVFDGDG-HMYLTRGWAQFARAHGLGLGSFLVFTYDGGST--LSVSVF 102
                       579****9999885..558999994566*******888886.5679***********************98544..588887 PP
2B336.21.1e-111902601686
                       EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       l +p +f  + g+  +++  + l+  +g+ W+vkl+     k++ r+ l+ GW +F+ +n+L +gD++ F++ +
  Bradi1g70067.1.p 190 LNVPVEFQVAQGYAGRSK--VELRM-RGKAWSVKLKQgvcPKRQPRTSLRYGWHQFCVDNRLAVGDTCFFRVLH 260
                       566777765665553344..44433.78*******8867533334599**********************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.60610105IPR003340B3 DNA binding domain
CDDcd100174.85E-1411102No hitNo description
SMARTSM010195.9E-1113105IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-1813107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1817105IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-1226102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18170288IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.83173288IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-11175260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.87175288IPR003340B3 DNA binding domain
PfamPF023623.3E-9192260IPR003340B3 DNA binding domain
CDDcd100175.64E-7214257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEDENPDLSG FEFFRVILEN TWEKQRMPDE FAAALDGREP QELKLREAGG GRLWAVDVVF  60
DGDGHMYLTR GWAQFARAHG LGLGSFLVFT YDGGSTLSVS VFGVTTCRKR FQRKKEDTDQ  120
EDDAGFGFDS PPLSSSPSGS GSRSKSSGGA GYEEGGSEMD GAEDDDDVSK SRFSVMLRQC  180
HFGLRQKQYL NVPVEFQVAQ GYAGRSKVEL RMRGKAWSVK LKQGVCPKRQ PRTSLRYGWH  240
QFCVDNRLAV GDTCFFRVLH PDQEEDEDDG DGDGEERHVL KVEVRRRDGS FVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g70067.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561895.10.0B3 domain-containing protein Os03g0212300
TrEMBLI1H8500.0I1H850_BRADI; Uncharacterized protein
STRINGBRADI1G70067.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Representative plantOGRP1414234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-14B3 family protein