PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g70860.1.p
Common NameBRADI_1g70860
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 338aa    MW: 35849.8 Da    PI: 5.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g70860.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-112623021055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+YIk +q
  Bradi1g70860.1.p 262 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVHYIKFMQ 302
                       9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14255315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-13257311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-12258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-12261306No hitNo description
PfamPF000102.1E-8262302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESSEASWHC SFDPSVAAED SEAMARLLGV HGCCFGGDDN GQIKQPAPAP PSSSSCMYWP  60
GNEADDHGQY YGGAAVPAPY YVQEQQHASA VGYQQCHAGG YYDGVATMGG AGEFFVAPDD  120
AQMADDPGLG FMVDLNIQFE DPLDDGNASS GCKRKLGDTG AGSKKKARST ATPPVQRKGK  180
GCAQPKKKGS KGACSRGGGV QQEESNVQSS SNNYLSDDDE SLEMTSCSNV SSASKKTSSS  240
RGGAKARAGR GAATDPQSLY ARKRREKINE RLKVLQNLVP NGTKVDISTM LEEAVHYIKF  300
MQLQIKLLSS DDMWMFAPIA YNGFNVGLDL KIAPPQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g70860.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313352.10.0transcription factor bHLH76
TrEMBLI1H8E60.0I1H8E6_BRADI; Uncharacterized protein
STRINGBRADI1G70860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Representative plantOGRP1278633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-45bHLH family protein