PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g71280.1.p
Common NameBRADI_1g71280
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26547.7 Da    PI: 6.5283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g71280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1863116356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++++eq + Le  F k++++ ++++ +LA++lgL+++qV vWFqNrRa++k
  Bradi1g71280.1.p  63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHK 116
                       45689***********************************************98 PP
2HD-ZIP_I/II107.87.7e-3563147286
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                       kkrrls+eq+++LE sF +++kLe++rK +la eLgl+++qvavWFqnrRAR+k k++E++y++L++a+da++ +n++Le+ev+ 
  Bradi1g71280.1.p  63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHKCKRMEVEYNKLRAAHDAVVVHNCHLEAEVQY 147
                       9********************************************************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.96958118IPR001356Homeobox domain
SMARTSM003892.4E-1461122IPR001356Homeobox domain
SuperFamilySSF466895.99E-1762127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1663116IPR009057Homeodomain-like
PfamPF000464.5E-1663116IPR001356Homeobox domain
CDDcd000861.68E-1563116No hitNo description
PRINTSPR000317.6E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.6E-698114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSPEEEETLL FPSSFVFPES FPAQADTPAS GGEQKKAGRQ RRRRKARLSA AAGDGAAGDD  60
AAKKRRLSDE QAQFLELSFM KDSKLETTRK LQLAAELGLD TKQVAVWFQN RRARHKCKRM  120
EVEYNKLRAA HDAVVVHNCH LEAEVQYRLL RLKARLAEAD EEKKLMAASA AATNGCGGGG  180
GGGGSSSPSS SSFSTVTQLM GQFGMEEAAD QADLTYMSEY DYNSYMMDLA GSSYLGGVYD  240
QFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g71280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558578.11e-135homeobox-leucine zipper protein HOX12
SwissprotA2XDK52e-76HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLI1H8J51e-178I1H8J5_BRADI; Uncharacterized protein
STRINGBRADI1G71280.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-32homeobox protein 40