PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g71280.2.p

Common Name

BRADI_1g71280, LOC100832807

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 26001 Da PI: 6.1517

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g71280.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F k++++ ++++ +LA++lgL+++qV vWFqNrRa++k Bradi1g71280.2.p 63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHK 116 45689***********************************************98 PP
2	HD-ZIP_I/II	111.5	5.5e-36	63	154	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE sF +++kLe++rK +la eLgl+++qvavWFqnrRAR+k k++E++y++L++a+da++ +n++Le+e +L+++l+e Bradi1g71280.2.p 63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHKCKRMEVEYNKLRAAHDAVVVHNCHLEAELLRLKARLAE 154 9**************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.969	58	118	IPR001356	Homeobox domain
SMART	SM00389	2.4E-14	61	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	62	127	IPR009057	Homeodomain-like
Pfam	PF00046	4.4E-16	63	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-16	63	116	IPR009057	Homeodomain-like
CDD	cd00086	1.05E-15	63	116	No hit	No description
PRINTS	PR00031	7.4E-6	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.4E-6	98	114	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSPEEEETLL FPSSFVFPES FPAQADTPAS GGEQKKAGRQ RRRRKARLSA AAGDGAAGDD 60 AAKKRRLSDE QAQFLELSFM KDSKLETTRK LQLAAELGLD TKQVAVWFQN RRARHKCKRM 120 EVEYNKLRAA HDAVVVHNCH LEAELLRLKA RLAEADEEKK LMAASAAATN GCGGGGGGGG 180 SSSPSSSSFS TVTQLMGQFG MEEAADQADL TYMSEYDYNS YMMDLAGSSY LGGVYDQFS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g71280.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558578.1	1e-176	homeobox-leucine zipper protein HOX12
Swissprot	A2XDK5	1e-78	HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBL	I1H8J6	1e-175	I1H8J6_BRADI; Uncharacterized protein
STRING	BRADI1G71280.1	1e-134	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-29	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Bradi1g71280.2.p
Entrez Gene	100832807