PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72330.1.p
Common NameBRADI_1g72330, LOC104581853
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 236aa    MW: 26602.4 Da    PI: 9.5789
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.4e-17135225199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp +f++++  +k ++ t+tl de+ +++e ++    ++++  l++GW +F+ ++g+ +gD+ vF+l++ ++f  +
  Bradi1g72330.1.p 135 FVKRMLHSHVVRGFWLGLPSHFCDSYL-PK-QDSTITLVDEKDEEFETNY--LAYKKG--LSGGWAGFALSHGILDGDSTVFQLIKPTTF--K 219
                       89************************4.33.5569***************..555555..9***********************986777..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v+++r+
  Bradi1g72330.1.p 220 VHIIRA 225
                       999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-19127226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23128225IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-25133224No hitNo description
PfamPF023622.0E-15135225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702135226IPR003340B3 DNA binding domain
SMARTSM010197.3E-17135226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAIEKGISPY EAARERKVQE NKRKMEALNL HHLSAAVAHA PKTPSPMKQK RRRIIQAAVV  60
APSPPRRSRR LAHLPEVKYA EVAPESERMK RWSPRKPTEI MCWGSGGSIS MEARLEAARK  120
AEELESELDP EFPSFVKRML HSHVVRGFWL GLPSHFCDSY LPKQDSTITL VDEKDEEFET  180
NYLAYKKGLS GGWAGFALSH GILDGDSTVF QLIKPTTFKV HIIRATVDND NKESE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72330.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229077.11e-175B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-137Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLI1H8X51e-174I1H8X5_BRADI; Uncharacterized protein
STRINGBRADI1G72330.11e-174(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]