PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72960.2.p
Common NameBRADI_1g72960, LOC100842793
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 256aa    MW: 28095.1 Da    PI: 9.5556
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72960.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.81.8e-33148204158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg+gGrF
  Bradi1g72960.2.p 148 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 204
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-38146207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.916147207IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.9E-29149204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24150172IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860152172IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24181204IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLSSSLNSKA RVEFHDMRRK EDMHENGTIM IQFGHQVPNY DSSASDSPQE VSGMSEGSHN  60
EQNEQSGRRD GYTNSDEGKM MSALSLGNSE TTYAQPKPDR THPFAVAYPY ADPFYGGAYG  120
SHAVMHPQIV GMVPSSRVPL PIEQAAAEEP IYVNAKQYHA ILRRRQLRAK LEAENKLVKS  180
RKPYLHESRH LHAMKRARGT GGRFLNSKQQ PEGSSGSDAS TRAGHSGIPA NGGMFSKHDH  240
TLSSGDLQYR VRGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23148210264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72960.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558692.11e-178nuclear transcription factor Y subunit A-7
TrEMBLA0A0Q3HKF30.0A0A0Q3HKF3_BRADI; Uncharacterized protein
STRINGBRADI1G72960.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.19e-42nuclear factor Y, subunit A6