PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73013.1.p
Common NameBRADI_1g73013
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 257aa    MW: 28250.8 Da    PI: 9.1937
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer60.83e-192980357
       ZF-HD_dimer  3 kvrYkeClkNhAaslG..ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      k++Y +C +NhA++lG  gh +DGC Ef++  g+      l+C  CgCHR+FHRr +
  Bradi1g73013.1.p 29 KAMYLDCIRNHAVALGqvGHCLDGCTEFVQPLGS-----RLNCEGCGCHRSFHRRVM 80
                      679*************889***********9555.....5***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-81082IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.1E-153179IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-143278IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.7533279IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.73E-12153223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-18159223IPR009057Homeodomain-like
CDDcd000860.00256163226No hitNo description
TIGRFAMsTIGR015655.9E-17163218IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTAQVEESNN PRRESDRAGR MSDVVSVRKA MYLDCIRNHA VALGQVGHCL DGCTEFVQPL  60
GSRLNCEGCG CHRSFHRRVM FDVSISVSVS PTPQPQPPQR QPVPTAVLSG DSSATESDED  120
DFQRSVPAPQ QQRRAPVAVA QQQQQQHYPA PLPMMVVAPE QVKRPRASFT TEQKTKMEEL  180
SERIGWFYKQ RNRATIEEGC REIGVTSSAF KNWMNNTKTK RNKLRRASVS ANNNNAAPPA  240
AASCSPALPP PPPAST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230244.11e-176zinc-finger homeodomain protein 9
TrEMBLA0A0Q3K0M20.0A0A0Q3K0M2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2275625
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-19zinc finger homeodomain 1