PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73016.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 193aa    MW: 20970.6 Da    PI: 8.6927
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer67.13.1e-211061358
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      + rY +C++NhAa+lG h vDGC  f+p     +  ++l+Ca CgCHR FHR e++
  Bradi1g73016.1.p 10 RPRYLDCMRNHAAALGKHCVDGCAKFVPP----AVGDSLNCAGCGCHRTFHRYEEA 61
                      679*************************9....4458***************8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-111057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.8E-181260IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-171259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.6341359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.8E-14108173IPR009057Homeodomain-like
SuperFamilySSF466892.58E-7110172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSDFVSVKRR PRYLDCMRNH AAALGKHCVD GCAKFVPPAV GDSLNCAGCG CHRTFHRYEE  60
AEVEVHAPVS PPPQLQQPMP AAAGGSDADT VPPLQQQFPP LPPPVAQQQP AAQQAQQARR  120
SYFNQEQKTQ MKELSLGWRY LKRDTATIEE GCRQIGLTPG VFKNWMGNNK RRRASDSTNN  180
GDAGTATPAA ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230244.12e-42zinc-finger homeodomain protein 9
TrEMBLA0A2K2DUU81e-141A0A2K2DUU8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2275625
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.19e-23homeobox protein 30