PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73020.1.p
Common NameBRADI_1g73020, LOC104582420
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 134aa    MW: 13963.8 Da    PI: 7.8327
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer68.89.3e-22957356
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                      k++Y +C+kNhA +lG h vDGC E++p  g+      l+C ACgCHR+FHR  
  Bradi1g73020.1.p  9 KMVYLDCQKNHATALGRHCVDGCMEYVPPVGN-----NLNCEACGCHRDFHRSL 57
                      789*************************9555.....5**************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-9555IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-171056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-181256IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.9671257IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAFVVSVNKM VYLDCQKNHA TALGRHCVDG CMEYVPPVGN NLNCEACGCH RDFHRSLVVK  60
VRVPVSVSQP PQPQPMPAAV RPRVDSDDGE SSAITSAVTT NAPSASTASS FAHPGAAIDG  120
PASMNRSSSP QSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230247.11e-93zinc-finger homeodomain protein 2
TrEMBLI1H9563e-92I1H956_BRADI; Uncharacterized protein
STRINGBRADI1G73020.15e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4995822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.12e-13mini zinc finger 2