PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73023.1.p
Common NameBRADI_1g73023
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 153aa    MW: 16614.7 Da    PI: 7.8485
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer62.96.5e-20958357
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      k rY +ClkNhAa+lG h+ DGC  f+         ++l C AC CHR FHRr +
  Bradi1g73023.1.p  9 KERYLDCLKNHAAALGRHSQDGCPQFVRPV-----GNSLYCVACRCHRGFHRRGE 58
                      679************************983.....368**************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-81160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-161156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-161157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.1061257IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSHFVVVKKE RYLDCLKNHA AALGRHSQDG CPQFVRPVGN SLYCVACRCH RGFHRRGEIE  60
VQVPPPPQLQ PMPAAVIPGV DSDDEESSAS ASAVTTNAPS ASIASQQGFW RPERRIQHSP  120
TSRSSARRVG RGCTPDGSMA EPEVEEEMVP RP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73023.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230247.16e-30zinc-finger homeodomain protein 2
TrEMBLA0A0Q3P0381e-107A0A0Q3P038_BRADI; Uncharacterized protein
STRINGBRADI1G73020.12e-29(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3716823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-12mini zinc finger 2