PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g73026.1.p

Common Name

BRADI_1g73026

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 148aa MW: 15673.8 Da PI: 5.8412

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g73026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	63.2	5.2e-20	9	57	3	56
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 k rY++ClkNhAa+l h+ DGC f+p ++l C ACgCHR FHR Bradi1g73026.1.p 9 KERYQDCLKNHAAALSKHSRDGCPWFVPP-----VGDSLYCVACGCHRGFHRLV 57 679***********************9.....3469************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.0E-16	11	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-9	11	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-17	11	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.298	12	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSHFVIVKKE RYQDCLKNHA AALSKHSRDG CPWFVPPVGD SLYCVACGCH RGFHRLVEIE 60 VHVPPPPQLQ PMPAAVIPGV VSDDDESSAS TSAVTTNAPS ASTARATDPA LVHEARAIPL 120 LAAWGRGCAP DGSMAEPEVE EEMVPKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g73026.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230247.1	5e-29	zinc-finger homeodomain protein 2
TrEMBL	A0A0Q3HKH2	1e-103	A0A0Q3HKH2_BRADI; Uncharacterized protein
STRING	BRADI1G73020.1	2e-28	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37168	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	6e-13	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Bradi1g73026.1.p