PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74060.7.p
Common NameBRADI_1g74060, LOC100846373
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 591aa    MW: 63695.2 Da    PI: 6.3614
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74060.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-083623991954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +e+  LA++ gL+  qV++WF N R +
  Bradi1g74060.7.p 362 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 399
                       554459******************************88 PP
2BELL98.74.7e-32223294172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +rqe+q+k + L+ +l++Vd+rY+qy+ ++q+v++s +avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Bradi1g74060.7.p 223 DRQEVQNKVTALMGMLDQVDRRYRQYQREMQAVAASLDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 294
                       699*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-43154292IPR006563POX domain
PfamPF075262.3E-45160290IPR006563POX domain
PROSITE profilePS5007111.839340403IPR001356Homeobox domain
SMARTSM003896.2E-8343407IPR001356Homeobox domain
CDDcd000861.13E-10343404No hitNo description
SuperFamilySSF466892.99E-16344410IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26346409IPR009057Homeodomain-like
PfamPF059202.6E-16360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MATFFSTDQR GLAGGGGGGD MSFHHHYPMA PSSNPYLQDA STGGLIPLPA TIAHIAQDEP  60
AAFMGSRADN GQPADSGSAT ADLQTQLLMG GDLQTQQRRL HHHHQGGGGG GLSLSLGTQV  120
PGVSLYQQQQ YRPGAMASPM SQPAMAMAMA ARQQQGSVYV QNSRFLKAAR ELLDEVVSVR  180
DAIVERKKKT TTTKEEEECD AGSKTTKEQE ENSSSGPELS PADRQEVQNK VTALMGMLDQ  240
VDRRYRQYQR EMQAVAASLD AVAGAGAARP YTALALQTIS RHFRSLRDAI GAQVQSARRS  300
LGEDPAAAGS SGLSRLRYID QHLRQQRAMQ QFGGLMQQPQ HAWRPQRGLP ESAVSVLRAW  360
LFEHFLHPYP KDSEKVMLAR QAGLSRGQVS NWFINARVRL WKPMVEEMYK EEFGAEMDST  420
NSSSDQKQQA GGKADDDDDH EDRDEFQSPT SAAARQAQAQ AQLMINNPYK PEPVAAMEGT  480
YTLLGHHHGP GGGGGGLLDA LAHHGGGDDG RFMAYGGGGS VSLTLGLQHC NNNNNNNNSN  540
SGNNNNNGAE HEQQGLLYGN PGDFDFLSDD RQRFGSSSAA AAQLLHDFVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16349406158Homeobox protein Meis1
4xrs_B7e-16349406158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74060.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675790.0AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562035.10.0BEL1-like homeodomain protein 7
RefseqXP_010229144.10.0BEL1-like homeodomain protein 7
RefseqXP_010229148.10.0BEL1-like homeodomain protein 7
RefseqXP_014752493.10.0BEL1-like homeodomain protein 7
RefseqXP_024310576.10.0BEL1-like homeodomain protein 7
RefseqXP_024310580.10.0BEL1-like homeodomain protein 7
TrEMBLI1H9D30.0I1H9D3_BRADI; Uncharacterized protein
STRINGBRADI1G74060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.13e-80BEL1-like homeodomain 7