PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g76030.1.p
Common NameBRADI_1g76030, LOC100845332
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 353aa    MW: 37811.5 Da    PI: 4.4364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g76030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-11183225754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  +++Y+++L
  Bradi1g76030.1.p 183 MAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILGDTIDYVNEL 225
                       79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16181254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8183225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-4183230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDQLGDEESF LDELMSSQRR EDAAPAELWH SSSYPGPQGG MMMMSDLLFY GADDDMDVAA  60
PFEDLPLPAP PGGPREEFSF DCLSEVCNPY RSRVGFVSGA EAAAAGRALT DPLHDAMEED  120
EMSRDKAHVL GDAGGGSSSL CPAPFVFGSG GCAGGPSSVS MTGASGVRHR SKLHGAIPSK  180
NLMAERRRRK RLNDRLSMLR SIVPRISKMD RTSILGDTID YVNELTERIK VLEEEIDAAP  240
EDLNLLNTIK DFSSGCSEMP ARNSTKFGVE KQGDGGTRIE MCCPANPGVL LSTLSALEAL  300
GLEIEQCVAS CFSDFGMQAS CLQVEGKRQG ISTDDEIKQA LFRSAGYGGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184191ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g76030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558868.10.0transcription factor bHLH61
SwissprotQ9LSL19e-56BH093_ARATH; Transcription factor bHLH93
SwissprotQ9LXA94e-56BH061_ARATH; Transcription factor bHLH61
TrEMBLI1HA080.0I1HA08_BRADI; Uncharacterized protein
STRINGBRADI1G76030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.13e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]