PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g77120.1.p
Common NameBRADI_1g77120, LOC100841302
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 257aa    MW: 27522 Da    PI: 5.3562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g77120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-1649107155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++ + grWv+e+r+p +  +  kr +r +lg++ +ae Aa+a++aa++ l+ 
  Bradi1g77120.1.p  49 PVYHGVRRRGRAGRWVCEVRVPGTgSCnkKRgQRLWLGTYFSAECAARAHDAAMLMLRA 107
                       68*******************87763354457**********************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-1249107IPR001471AP2/ERF domain
SMARTSM003802.7E-1250123IPR001471AP2/ERF domain
PROSITE profilePS5103219.57250117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2050119IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1250118IPR016177DNA-binding domain
CDDcd000183.27E-1263119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDGSCQWMSF TSSSSSSSSS HNGQAGAPWP PPPPKRPAGR TKFKETRHPV YHGVRRRGRA  60
GRWVCEVRVP GTGSCNKKRG QRLWLGTYFS AECAARAHDA AMLMLRAAPG ARVLNFPDSE  120
WLLDVPIMAL PAAADLSCVR RASVAAVADF QRREPAANGA AAVLDLDEAA VSWATTSSQL  180
ARANNNGGML MFDFEVPVAA MGSDGMFELE DICGETDLDM YYTELAGGLL MEPPPDAGAC  240
WESRDAGADA DLWSCY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g77120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0714061e-41AM071406.1 Avena sativa mRNA for CBF-like transcription factor (cbf1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562170.10.0dehydration-responsive element-binding protein 1H
SwissprotA2Z3882e-45DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-45DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLI1HAE10.0I1HAE1_BRADI; Uncharacterized protein
STRINGBRADI1G77120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-19C-repeat-binding factor 4