PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g77150.1.p

Common Name

BRADI_1g77150, LOC100843910

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 312aa MW: 33843.9 Da PI: 9.8787

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g77150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.2	9.2e-30	37	149	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kv tpsdv+k++rlv+pk++ae++ gg ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v Bradi1g77150.1.p 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsttaaaastGGG--GGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTV 127 89***********************998888877765333..7789***************************************** PP EEE..E-SS.SEE..EEEEE-S CS B3 81 vFk..ldgr.sefelvvkvfrk 99 F + ++ +++l++ ++r+ Bradi1g77150.1.p 128 SFGrgVGSEaAKGRLFIDWRRR 149 95433556888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-38	32	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.29E-28	34	132	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.13E-24	35	129	No hit	No description
SMART	SM01019	1.7E-21	37	150	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.324	37	150	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.7E-27	37	149	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEFTAIRSPA AGRTSEHDGG GPSSTTDQVQ VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPLDSTTA AAASTGGGGG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR 120 LDAGDTVSFG RGVGSEAAKG RLFIDWRRRP DSMASALPLP RFTRLPNSVP FAPWTMTAPQ 180 QQGHPFFSGS GGRAFMAPSP PSFVYDDGYY GAPGHGGGRQ VLYYRPQQQQ HAAVVLESVP 240 VRMGMAMAAE EAVPSSGTKR VRLFGVNLDY SEEDSNSRPA PMQLQQLMSP ASSTSTSSSS 300 GKARCSLNLD L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-59	32	150	3	114	B3 domain-containing transcription factor NGA1
5os9_B	2e-59	32	150	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g77150.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210491	4e-61	AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBank	CP012611	4e-61	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT833296	4e-61	CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558950.1	0.0	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-102	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	I1HAE4	0.0	I1HAE4_BRADI; Uncharacterized protein
STRING	BRADI1G77150.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168
Representative plant	OGRP365	16	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-61	B3 family protein

Link Out ? help Back to Top
Phytozome	Bradi1g77150.1.p
Entrez Gene	100843910

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]