PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g77610.2.p
Common NameBRADI_1g77610, LOC100824264
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 710aa    MW: 75461.9 Da    PI: 8.9795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g77610.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.8e-2977161187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+++e+laL+++r++m+ ++r+++lk+plWe+vs+++ e g++rs k+C+ek+en+ k+y+++k+g+ +r   + +t+++f++lea
  Bradi1g77610.2.p  77 RWPREETLALLKIRSDMDAAFREAALKGPLWEQVSRRIGEMGYKRSGKKCREKFENVDKYYRRTKDGRAGR--AHGKTYRFFSELEA 161
                       8********************************************************************98..56667******985 PP
2trihelix98.84.6e-31420513186
          trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                       rW+k ev+aLie+r+eme r+++g         k+plWe++++ mr+ g+ rs+k+Ckekwen+nk++kk+ke+++++ ++ +s+tcpyf+ql
  Bradi1g77610.2.p 420 RWPKAEVHALIELRTEMEARYGNGGggghetpNKGPLWEDIAAGMRRLGYARSSKRCKEKWENINKYFKKVKESSRSKqRPVDSKTCPYFHQL 512
                       8*********************8744555566********************************************9956999********** PP

          trihelix  86 e 86 
                       +
  Bradi1g77610.2.p 513 D 513
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001574136IPR001005SANT/Myb domain
PROSITE profilePS500906.91176134IPR017877Myb-like domain
CDDcd122038.92E-2576141No hitNo description
PfamPF138373.2E-1976162No hitNo description
PROSITE profilePS500906.992413484IPR017877Myb-like domain
SMARTSM007170.046417486IPR001005SANT/Myb domain
CDDcd122032.17E-26419491No hitNo description
PfamPF138373.2E-21419515No hitNo description
Gene3DG3DSA:1.10.10.608.8E-4419483IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MQQEPTPEMP PFSPAVWRGP AGAPSPISSR PPAPGQQQQM VAAADELGGG GGAAASASGS  60
GSLDGEEGGS SAAGGNRWPR EETLALLKIR SDMDAAFREA ALKGPLWEQV SRRIGEMGYK  120
RSGKKCREKF ENVDKYYRRT KDGRAGRAHG KTYRFFSELE ALHSISISSS AAHPPPLPAL  180
APPPSKLPAP SPPLPTATCA MAAPGASLSS LGGSDGSETD DDEIAAEGSK KRKRHSSNWS  240
GITTTSSGGG GGKKKQATMR LFEGMMRQVM ERQEAMQQRL LDAIERRDQE RLAREESWRR  300
GETARLAREQ DALARDRAAA AARDAAVVSF IHRVTGQMAV LPPPPPETKT ATKAAMLKRP  360
PPAPPLQPTT PRNQPQQPHV VMPMSAPASA SAPARAETSP AQSNEVVAVG GVDTAAAASR  420
WPKAEVHALI ELRTEMEARY GNGGGGGHET PNKGPLWEDI AAGMRRLGYA RSSKRCKEKW  480
ENINKYFKKV KESSRSKQRP VDSKTCPYFH QLDKLYRTKA QNAAAASQSP TAVTVLAAVP  540
LSSQTPAPHI VEHGPGKNLS NGNGNSNGMQ AKASNGNGTA AANKLESKQD GMITKETTTE  600
QHPQPAGSPM APMNHNLNNY GNGRTEVMHD DMDDIDSMDD DDDFDSDDED DAIGGGRNEQ  660
VQSYDIRFQS QQQQQQHQNT NGGGNPPAAP ASAAAASGAA PAPFLAMVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g77610.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230299.10.0trihelix transcription factor GTL1
TrEMBLA0A0Q3KIH60.0A0A0Q3KIH6_BRADI; Uncharacterized protein
STRINGBRADI1G77610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-39Trihelix family protein