PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g78230.1.p
Common NameLOC100834684
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 621aa    MW: 65332.4 Da    PI: 6.287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g78230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.24.7e-952546192374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                       v++L e+A+  ++gd   a+++Larl+++   a ++g+p+ R a+yf+eAL+  l   + e +++ ++ ++++ ++  +l a+k+fsevsP+l
  Bradi1g78230.1.p 254 VDQLAEAARLAEAGDGFGAREILARLNHRlpaAPSAGTPLLRSAFYFKEALRVALDAATGEAASSSAAAASTPVDVLLKLGAYKAFSEVSPVL 346
                       689*************************999666677********************888888888999999999****************** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       +f+h+t+ qa+l++++g+ ++H++Dfdi+ G QW++L+q+La+R+ g++ l++T+++sp+s++  el+ ++e+L++fA+elgvpf+f+++   
  Bradi1g78230.1.p 347 QFAHFTCVQAVLDELAGAACIHVLDFDIGVGEQWASLMQELAQRRPGAAALKVTALVSPASHHPLELQLIHENLSNFAAELGVPFQFTFF--- 436
                       *****************************************************************************************9... PP

              GRAS 185 rledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleak 274
                       +l+++++ eL ++  g+a+aV+l +   +      +     ++vL+lv++l +k+v+ v++ +d+  ++ +F++++++al+ ++ l++sl+a 
  Bradi1g78230.1.p 437 SLDAVDPAELlAIAGGDAIAVHLPVGSVHAA----A----VPSVLHLVRRLGAKLVISVDRSCDRggGELPFATHLFQALQSCMFLLESLDAM 521
                       889998877637777**********998887....4....456**********************655669*******************998 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        +++ + ++k+Er+l++++i+++v+ ++++ +    ++  Wr ++ +aGF pv++s++a++qa++ll+kv+++g+rve++ gsl+l W++ +L
  Bradi1g78230.1.p 522 -GTDPDVASKIERFLIQPKIESCVTRRHRA-VTAGDKMLPWRTMFASAGFVPVQISNFAEAQADSLLKKVPVRGFRVEKRGGSLLLHWQRAEL 612
                       .7888************************9.88888899****************************************************** PP

              GRAS 368 vsvSaWr 374
                       vsvSaWr
  Bradi1g78230.1.p 613 VSVSAWR 619
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.066227599IPR005202Transcription factor GRAS
PfamPF035141.6E-92254619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MPLGDLLLHG NQDQLASCAA ATDLWDPASV LDHRPSPPAS ASSTLSSSSP LRAPAAGVAA  60
LAKNVHPPPA QPAAASPWPP PPGEDDWVHH LPPLDMGMGM GMTWGDPHQS AAMPMPPVAG  120
DHQNPPSQQD STFLRWIIGG DDASSAAAMD HPDLDLDHML PFPLHPGNDD TKPAATAPPF  180
RSPLLHQQPH THAAFHGGFP SSASFDTQQQ AAKRQHPMAG ASSPKLLPPF VSGPGGFVSA  240
LKPKAEAGDD AAAVDQLAEA ARLAEAGDGF GAREILARLN HRLPAAPSAG TPLLRSAFYF  300
KEALRVALDA ATGEAASSSA AAASTPVDVL LKLGAYKAFS EVSPVLQFAH FTCVQAVLDE  360
LAGAACIHVL DFDIGVGEQW ASLMQELAQR RPGAAALKVT ALVSPASHHP LELQLIHENL  420
SNFAAELGVP FQFTFFSLDA VDPAELLAIA GGDAIAVHLP VGSVHAAAVP SVLHLVRRLG  480
AKLVISVDRS CDRGGGELPF ATHLFQALQS CMFLLESLDA MGTDPDVASK IERFLIQPKI  540
ESCVTRRHRA VTAGDKMLPW RTMFASAGFV PVQISNFAEA QADSLLKKVP VRGFRVEKRG  600
GSLLLHWQRA ELVSVSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2928561932375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g78230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7309010.0EU730901.1 Brachypodium distachyon clone BAC DH037O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312008.10.0scarecrow-like protein 6
TrEMBLI1HAT10.0I1HAT1_BRADI; Uncharacterized protein
STRINGBRADI1G78230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-88GRAS family protein