PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00280.1.p
Common NameBRADI_2g00280, LOC100831835
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 387aa    MW: 42249.6 Da    PI: 8.6496
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32141199260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dgy+WrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g H+h+k
  Bradi2g00280.1.p 141 EDGYKWRKYGQKQVKGSENPRSYYKCTYSNCSMKKKVERSLADGRITQIVYKGAHHHPK 199
                       8********************************************************85 PP
2WRKY1054.1e-33280338159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK+vkg+++prsYY+Ct+  Cpv+k+ver+++d+++v++tYeg+Hnh+
  Bradi2g00280.1.p 280 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVACPVRKHVERASHDNRAVITTYEGKHNHD 338
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28127200IPR003657WRKY domain
PROSITE profilePS5081126.314135200IPR003657WRKY domain
SuperFamilySSF1182901.7E-25138200IPR003657WRKY domain
SMARTSM007741.1E-33140199IPR003657WRKY domain
PfamPF031063.2E-24141198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-36265340IPR003657WRKY domain
SuperFamilySSF1182907.06E-29272340IPR003657WRKY domain
PROSITE profilePS5081137.206275340IPR003657WRKY domain
SMARTSM007748.4E-38280339IPR003657WRKY domain
PfamPF031062.4E-25281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASSTGSLDH AAGFTFTTSF TDLLSGSTPM PKFKSSQPPS LPISPSSFSY FSIPPGLSPA  60
DLLDSPVLLN YSNILASPTT GAIPAHWKAS QQDQDSRGSG DFSFQAVNKH TDSSPQTNSF  120
PSIKEQQVAQ VSNNKSNKQL EDGYKWRKYG QKQVKGSENP RSYYKCTYSN CSMKKKVERS  180
LADGRITQIV YKGAHHHPKP LSTRRHNTSP PVADQEHSGV TPENSSVTFG DDEADNGSSQ  240
GAEPQAKRWK EDADNEGSSG GKPVREPRLV VQTLSDIDIL DDGFRWRKYG QKVVKGNPNP  300
RSYYKCTTVA CPVRKHVERA SHDNRAVITT YEGKHNHDVP LGRPTTSSSS AAAAGHGQQG  360
PYTLEMLTNT KDEPRDDLFV DSLLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-35140340877Probable WRKY transcription factor 4
2lex_A6e-35140340877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00280.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904363e-96AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAK1211903e-96AK121190.1 Oryza sativa Japonica Group cDNA clone:J023086B03, full insert sequence.
GenBankAY6769293e-96AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566790.10.0probable WRKY transcription factor 26 isoform X1
RefseqXP_010230320.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R42e-99WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLI1HB170.0I1HB17_BRADI; Uncharacterized protein
STRINGBRADI2G00280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.18e-96WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]