PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00720.1.p
Common NameBRADI_2g00720, LOC100830809
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 207aa    MW: 23294.8 Da    PI: 9.5898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-092372554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +e+Er+RR++++    +L +l+Pk+   ++  ++  + L +A  YIk+L
  Bradi2g00720.1.p 23 RKEIERKRRQHMKGLCLKLASLIPKQHYSSADTMTQLSSLDEAASYIKKL 72
                      589**********************76788888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3311872IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-52376No hitNo description
Gene3DG3DSA:4.10.280.101.6E-122388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-72372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-112388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-62478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEEVKGKGVR RSKAKSIGMT MERKEIERKR RQHMKGLCLK LASLIPKQHY SSADTMTQLS  60
SLDEAASYIK KLKDRVDELR QKKNSAQAMA SSREVGGASK MRDRTMLSEL EVEEEAGEAL  120
SASVPVVEVR HHDDSSMDVV LICNAKRPLK FHEVITVLEE EGAEIINANY SVGDDKIFYT  180
IHSRAFSSRI GIEVSRVYER LRALVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565225.11e-148transcription factor bHLH162
TrEMBLI1HB711e-147I1HB71_BRADI; Uncharacterized protein
STRINGBRADI2G00720.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-21bHLH family protein