PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00730.1.p
Common NameBRADI_2g00730, LOC100831116
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 213aa    MW: 23534 Da    PI: 9.6416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-092978554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       +e+Er RR++++    +L +l+Pk +   +   ++  + L +A  YIk+L
  Bradi2g00730.1.p 29 RKEIERERRQHMKGLCLKLASLIPKeN-YSSTDTMTQLDSLDEAASYIKKL 78
                      589**********************55.444455***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.7342478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-132893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-73084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-113094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-63078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEEVKGNKGK GVRRSRAKST GGMTAAAERK EIERERRQHM KGLCLKLASL IPKENYSSTD  60
TMTQLDSLDE AASYIKKLKD RVDELQQKKS SAQAIASLRS GVGQSSKMGV FSELEVEKAG  120
ERLSASVPVV QVRHHDDSSM DVVLLCSAKR PIKFHEVITI LEEEGAEVVN ANYSISGDKV  180
FYTIHCRAFS SRIGIEVSRV SERLSILMKF VN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00730.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565226.11e-153transcription factor bHLH162
TrEMBLI1HB721e-152I1HB72_BRADI; Uncharacterized protein
STRINGBRADI2G00730.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-18bHLH family protein