PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00740.1.p
Common NameBRADI_2g00740, LOC100832319
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 210aa    MW: 22308.1 Da    PI: 10.351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.8e-072590455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55
                        + +E++RR +++    +L +l+P +              + +sk   +  + L  A  YIk+L+
  Bradi2g00740.1.p 25 ERKDVEKNRRLHMKGLCLKLSSLVPASHhhhntsfnsssppSSNSKDaATQLDQLDSAAAYIKQLK 90
                      56889*********************777***********95555556****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.7342189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-923101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1123101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00422795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKSRRQQQQS VGVTSSDGGG CNKMERKDVE KNRRLHMKGL CLKLSSLVPA SHHHHNTSFN  60
SSSPPSSNSK DAATQLDQLD SAAAYIKQLK SRIDELRRRK QSRAGNGGGG GSSSSSGNGK  120
GNGEMLPVVE VRQQENAAVD VALVSEAGKP FKLHEVIAVL EQEGAEVVSA SFSAVADKIF  180
YTIHSQALCP RIGLDAARVA HRLRALAAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564810.11e-152transcription factor bHLH168
TrEMBLI1HB731e-151I1HB73_BRADI; Uncharacterized protein
STRINGBRADI2G00740.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-13bHLH family protein