PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g03830.3.p

Common Name

BRADI_2g03830, LOC100829781

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 259aa MW: 27556.1 Da PI: 8.5821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g03830.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	70	114	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN ++ Lr+++P a k ++Ka+ L ++v+ +k+L Bradi2g03830.3.p 70 HSEAERRRRERINAHLAALRRMVPDA-----KQMDKATLLARVVDQVKDL 114 9***********************.....67*********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-13	56	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.977	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-13	69	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	70	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-11	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	8.7E-5	154	207	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.2E-6	154	219	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAAACRSLQQ EGKGELQPYE GCGDPLAACR GGPAVLLPRQ ASSAPPPEMS SSSGSGSGRS 60 ATEARALKIH SEAERRRRER INAHLAALRR MVPDAKQMDK ATLLARVVDQ VKDLKRRASE 120 TTATQPTPAQ TDEVSVECCT GNDDDSSLYY MKASVSCDDR PGLVAGLIGA LHGLRLRPVR 180 AEVTSLGGRV QHVFTLCNEE GSADFAGLRS LKEAVRQALA RVASPELLCG SNGSNGNANP 240 FQSKRQRILE SHYSVMSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g03830.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565367.1	0.0	transcription factor bHLH51
TrEMBL	I1HC88	0.0	I1HC88_BRADI; Uncharacterized protein
STRING	BRADI2G03830.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi2g03830.3.p
Entrez Gene	100829781