PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04000.2.p
Common NameBRADI_2g04000
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 256aa    MW: 27924.1 Da    PI: 8.372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-1977126255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  Bradi2g04000.2.p  77 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYG 126
                       59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-1376126IPR001471AP2/ERF domain
PROSITE profilePS5103221.79977134IPR001471AP2/ERF domain
SMARTSM003804.1E-3477140IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2177134IPR016177DNA-binding domain
CDDcd000188.60E-2978136No hitNo description
Gene3DG3DSA:3.30.730.103.9E-3178135IPR001471AP2/ERF domain
PRINTSPR003672.9E-97889IPR001471AP2/ERF domain
PRINTSPR003672.9E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MERGEGKRGA GDCSVQERKK KVRRRSTGPD SIAETIKKWK EQNQKLQGEN GPRKAPAKGS  60
KKGCMAGKGG PENSNCAYRG VRQRTWGKWV AEIREPNRGK RLWLGSFPTA VEAAHAYDEA  120
ARAMYGAKAR VNFSEHSTDA NSGCTSAPSL LMSNGPTTAS HPSDEKDELE SPPFVMSSAP  180
TDGLHQPDAK DEYGSAGTLV HEVKTEVSND LRSTCEEHKT AEVFQQEGNA LHKEVKVPWI  240
QATLFHYEDP LLASC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1578133662ATERF1
3gcc_A8e-1578133662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7173960.0AJ717396.1 Schedonorus arundinaceus mRNA for putative DREB2A protein (DREB2A gene), clone 1773-2.
GenBankAY5533310.0AY553331.1 Poa pratensis putative DRE-binding protein DREB2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314715.11e-177dehydration-responsive element-binding protein 2A isoform X4
SwissprotA2WL191e-124DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0Q3IR730.0A0A0Q3IR73_BRADI; Uncharacterized protein
STRINGBRADI2G04000.11e-176(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-36ERF family protein