PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04622.1.p
Common NameBRADI_2g04622, LOC104583029
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 220aa    MW: 23991.1 Da    PI: 9.2893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04622.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-075378126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC+ +  tG+C y + C+FaHg
  Bradi2g04622.1.p 53 YKTKLCDKYETTGFCMYAEGCTFAHG 78
                      9************************8 PP
2zf-CCCH17.76.4e-06109130425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       + C++f+  G C+yG++C F H
  Bradi2g04622.1.p 109 RVCHNFRDRGVCHYGEKCVFPH 130
                       68****************9966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-144885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-95183IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8125280IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-45378IPR000571Zinc finger, CCCH-type
SMARTSM003560.97105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.225105133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4109131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5109131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MERVIRRWDS TPEDVIVLQT GGGPVRPQPS SAGIVPQQQC PDLPPPPPEK LYYKTKLCDK  60
YETTGFCMYA EGCTFAHGHA DLRRPTHGFA DLRRLPPDAH GPAGAVGGRV CHNFRDRGVC  120
HYGEKCVFPH TSAPGSGREI RNTGEPRRSE ASPAARASSA TAPRYGSAPG RAFPPLPAPV  180
VPRQMPEQQQ QQGAPKVSVL ERLSQRKTRG IYGDWPEHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04622.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232991.11e-160zinc finger CCCH domain-containing protein 1
TrEMBLA0A0Q3MEW21e-159A0A0Q3MEW2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-06C3H family protein